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Main application

Main application and commands
Commands
  • Two main commands are supported by DeepSeqCoverageQC
    • buildIndex
    • computeCoverageQC
Usage
  • Application can be run from the terminal as follows,
DeepSeqCoverageQC --help

Usage: DeepSeqCoverageQC [OPTIONS] COMMAND [ARGS]...

 DeepSeqCoverageQC: Compute coverageQC for targeted deep sequencing data

╭─ Options ──────────────────────────────────────────────────────────────────────╮
│ --help      Show this message and exit.                                        │
╰────────────────────────────────────────────────────────────────────────────────╯
╭─ Commands ─────────────────────────────────────────────────────────────────────╮
│ buildIndex            Generate index for the panel                             │
│ computeCoverageQC     Compute coverageQC metrics across panel regions.         │
╰────────────────────────────────────────────────────────────────────────────────╯